About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85962282_85963155_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85962282 - 85963155
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAACT
Flanking Amino Acid:
ELHVLDVAGNRLTYLPLSLT
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.9
0.49
1
67.7
42.7
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
77.1
0.93
1.3
92.31
29.7

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564