About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85998771_86044052_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85998771 - 86044052
Intron Length:
45282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AAATGTTGAACT
Flanking Amino Acid:
GREALEEKQTVTSQESETKP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.1
32.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
40.1
-1.1
3.2
57.2
46.9
Minor BPS
51.7
0.13
1.9
69.52
41

Associated Gene:

Gene:
MLIP
Ensembl Gene ID:
ENSAPLG00000002307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034725
85998221 - 86112942
114722