Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86044212_86046265_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86044212 - 86046265

Intron Length:

2054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGGTT

5'SS Class:

major

3'SS Sequence:

CTATCTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

ATGCATCTAACT

Flanking Amino Acid:

DLSNQEIINKSNIVSNEQSL

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

70.2

40.4

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

82.6

0.73

0.8

31.4

Minor 5ss

33.1

-1.9

4.1

54.5

49.7

Minor BPS

49.3

0.03

1.8

69.8

40.7

Associated Gene:

Gene:

MLIP

Ensembl Gene ID:

ENSAPLG00000002307

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034725

85998221 - 86112942

114722

ENSAPLT00000002390

85998708 - 86112942

114235