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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86060632_86068988_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86060632 - 86068988
Intron Length:
8357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATCTTTTGAATT
Flanking Amino Acid:
PTNTLLMEQKALEEPTKTAS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.3
0.71
0.9
74.9
38.8
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
61.7
0.45
1.4
74.22
37.3

Associated Gene:

Gene:
MLIP
Ensembl Gene ID:
ENSAPLG00000002307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034725
85998221 - 86112942
114722
ENSAPLT00000002390
85998708 - 86112942
114235