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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86076781_86083508_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86076781 - 86083508
Intron Length:
6728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTGTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTATCACT
Flanking Amino Acid:
STPMVAESQMTKPGVIRPVL
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.3
0.32
1.1
63.3
41.9
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
63.6
0.51
2
88.67
36.3

Associated Gene:

Gene:
MLIP
Ensembl Gene ID:
ENSAPLG00000002307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034725
85998221 - 86112942
114722
ENSAPLT00000002390
85998708 - 86112942
114235