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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86089893_86112907_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86089893 - 86112907
Intron Length:
23015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGTTCTTAATA
Flanking Amino Acid:
PYCHNSLYNKVTNERGSI*
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.7
34.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.9
0.58
1
70
39.4
Minor 5ss
35.5
-1.7
3.5
49.2
47.3
Minor BPS
80.8
0.96
1
82.55
32.7

Associated Gene:

Gene:
MLIP
Ensembl Gene ID:
ENSAPLG00000002307
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034725
85998221 - 86112942
114722