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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86119078_86122748_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86119078 - 86122748
Intron Length:
3671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CCTTCATAAAAT
Flanking Amino Acid:
METTKGCNRAFCSDLFLNS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
49.5
0.04
2.1
70.06
46.5

Associated Gene:

Gene:
TINAG
Ensembl Gene ID:
ENSAPLG00000015513
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033438
86119050 - 86146159
27110