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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86146490_86150676_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86146490 - 86150676
Intron Length:
4187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
EEIMDKGPVQAIMKVYEDFF
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
82.4
34
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
TINAG
Ensembl Gene ID:
ENSAPLG00000015513
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016197
86122865 - 86167037
44173