About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86150783_86165874_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86150783 - 86165874
Intron Length:
15092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TCTCTTGTAACA
Flanking Amino Acid:
KWKTHSVKLLGWGSLPGKNG
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
76.5
0.6
0.9
72.6
36.4
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
52.7
0.08
2
67.58
39.4

Associated Gene:

Gene:
TINAG
Ensembl Gene ID:
ENSAPLG00000015513
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016197
86122865 - 86167037
44173