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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86165921_86166926_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86165921 - 86166926
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATATATATATTT
Flanking Amino Acid:
GKNGQKQKFWIAANSWGKSW
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
45.6
-0.2
1.9
65.18
39.4

Associated Gene:

Gene:
TINAG
Ensembl Gene ID:
ENSAPLG00000015513
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016197
86122865 - 86167037
44173