Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86224646_86229105_F

Intron Information:

Intron Rank:

146826

Intron Class:

major

Intron Phase:

Intron Coordinates:

86224646 - 86229105

Intron Length:

4460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAGGTAGA

5'SS Class:

major

3'SS Sequence:

ATTTTTCTCTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TATTTCCTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

1.1

40.9

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

75.3

0.57

31.7

Minor 5ss

36.1

-1.6

3.1

45.9

42.7

Minor BPS

55.1

0.24

1.9

77.44

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019081

86224361 - 86229193

4833