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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86347544_86356334_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86347544 - 86356334
Intron Length:
8791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAATTATCT
Flanking Amino Acid:
KQGCQVQRLRNMRVRTVKGQ
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.9
0.9
0.7
88.6
28.1
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
52.9
0.17
2
80.24
40.8

Associated Gene:

Gene:
FAM83B
Ensembl Gene ID:
ENSAPLG00000015482
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016126
86315099 - 86360778
45680