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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86445838_86460672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86445838 - 86460672
Intron Length:
14835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCTTTCCAAATT
Flanking Amino Acid:
FIVALVGNVLVCIAVWKNHH
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
74.7
0.56
0.9
71.8
37.3
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
52.9
0.17
2
75.59
41.9

Associated Gene:

Gene:
HCRTR2
Ensembl Gene ID:
ENSAPLG00000015204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015863
86445609 - 86487389
41781