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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86460852_86462518_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86460852 - 86462518
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGACA
Flanking Amino Acid:
PLCKVIPYLQTVSVSVSVLT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.1
0.72
0.7
81
24.2
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
68.6
0.58
1.6
80.98
33.7

Associated Gene:

Gene:
HCRTR2
Ensembl Gene ID:
ENSAPLG00000015204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015863
86445609 - 86487389
41781