About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86462763_86470254_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86462763 - 86470254
Intron Length:
7492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
LFTVCDEHWGAEVYPKMYHT
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.8
0.81
0.8
77.5
36.2
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
HCRTR2
Ensembl Gene ID:
ENSAPLG00000015204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015863
86445609 - 86487389
41781