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Intron Name: Anas_platyrhynchos_platyrhynchos_3_86470371_86480777_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86470371 - 86480777

Intron Length:

10407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

CTAATTTTGAGG

Flanking Amino Acid:

QIFRKLWCRQIPGTSSVVQK

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.6

1.05

0.7

81.4

32.7

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

74.3

0.55

73.5

41.9

Minor 5ss

34.5

-1.8

2.9

43.8

43.9

Minor BPS

45.6

-0.4

1.7

46.56

40.9

Associated Gene:

Gene:

HCRTR2

Ensembl Gene ID:

ENSAPLG00000015204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015863

86445609 - 86487389

41781