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Intron Name: Anas_platyrhynchos_platyrhynchos_3_86480999_86482424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86480999 - 86482424

Intron Length:

1426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TCTTTCAGATTT

Flanking Amino Acid:

LPISILNVLKRVFGMFNHAD

Intron Amino Acid Position:

330

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

81.9

32.1

Major BPS

75.8

0.64

65.8

Major PPT

88.7

0.87

0.6

88.9

20.4

Minor 5ss

-0.9

3.5

64.1

47.4

Minor BPS

47.1

-0.1

1.9

69.08

42.2

Associated Gene:

Gene:

HCRTR2

Ensembl Gene ID:

ENSAPLG00000015204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015863

86445609 - 86487389

41781