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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86482547_86483641_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86482547 - 86483641
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAATC
Flanking Amino Acid:
ANPIIYNFLSGKFREEFKAA
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
100
1.24
0.5
100
0
Major PPT
70.5
0.46
1.1
65.6
44.4
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
67.7
0.54
1.7
80.85
33.2

Associated Gene:

Gene:
HCRTR2
Ensembl Gene ID:
ENSAPLG00000015204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015863
86445609 - 86487389
41781