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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86491238_86494365_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86491238 - 86494365
Intron Length:
3128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
GTTGTGTTAAAT
Flanking Amino Acid:
MAALLRRVLLMYFINTA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
84.5
0.78
0.8
78.9
32.9
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
49.6
0.05
2.2
73.29
43.5

Associated Gene:

Gene:
GFRAL
Ensembl Gene ID:
ENSAPLG00000015121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015754
86491216 - 86517084
25869