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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86500773_86501240_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86500773 - 86501240
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
LLGKQCGTDKEYLKTSSKSD
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.3
0.5
1
67.3
37.9
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
GFRAL
Ensembl Gene ID:
ENSAPLG00000015121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015754
86491216 - 86517084
25869