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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86501667_86502406_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86501667 - 86502406
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ACATGCTTATAT
Flanking Amino Acid:
DDDKSQDTDTENISMETKLQ
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.2
0.84
0.8
81.2
36.5
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
47.4
-0.1
2.1
64.4
45.6

Associated Gene:

Gene:
GFRAL
Ensembl Gene ID:
ENSAPLG00000015121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015754
86491216 - 86517084
25869