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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86502464_86503217_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86502464 - 86503217
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAA
Flanking Amino Acid:
QWSLSALSKKAHTANRTCLD
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.7
85.5
28.9
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
61.3
0.35
1.4
68.54
37.9

Associated Gene:

Gene:
GFRAL
Ensembl Gene ID:
ENSAPLG00000015121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015754
86491216 - 86517084
25869