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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86516023_86516996_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86516023 - 86516996
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATTGTTAAAT
Flanking Amino Acid:
GIVLLTLLKIRPCRTKHESR
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
59.8
0.39
2.1
81.73
39.5

Associated Gene:

Gene:
GFRAL
Ensembl Gene ID:
ENSAPLG00000015121
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015754
86491216 - 86517084
25869