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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86530220_86554041_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86530220 - 86554041
Intron Length:
23822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TGTAATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTGTTGTAATT
Flanking Amino Acid:
ALANILTAIQMGVAVVDSSV
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79
0.65
1
69.6
45.6
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
49.4
0.03
2.1
71.21
40.9

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043692
86525517 - 86602285
76769
ENSAPLT00000015462
86525517 - 86602285
76769