Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86552449_86554041_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86552449 - 86554041

Intron Length:

1593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCAA

5'SS Class:

major

3'SS Sequence:

CTTATGTGCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

ACCTCCTTATGT

Flanking Amino Acid:

ALANILTAIQVLLQCMSEGA

Intron Amino Acid Position:

264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

67.7

Major BPS

78.8

0.72

67.9

40.1

Major PPT

70.8

0.47

68.6

41.9

Minor 5ss

30.1

-2.3

3.2

38.5

46.5

Minor BPS

54.7

0.22

69.66

47.3

Associated Gene:

Gene:

HMGCLL1

Ensembl Gene ID:

ENSAPLG00000014814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025727

86530094 - 86602285

72192

ENSAPLT00000033897

86551229 - 86602285

51057