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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86554231_86558708_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86554231 - 86558708
Intron Length:
4478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACC
Flanking Amino Acid:
GNIIPAKVAEVSKRLYSMGC
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
37.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
35.8
-1.6
3.5
47.7
42.3
Minor BPS
78.8
0.88
1.1
81.25
33.5

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025727
86530094 - 86602285
72192
ENSAPLT00000017672
86499468 - 86602285
102818
ENSAPLT00000015462
86525517 - 86602285
76769
ENSAPLT00000033897
86551229 - 86602285
51057