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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86558773_86571784_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86558773 - 86571784
Intron Length:
13012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATA
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
AGAGAAGTATCT
Flanking Amino Acid:
SARNMNIPVRGYVSCALGCP
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
80.4
34.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.3
0.7
0.8
77.3
31.5
Minor 5ss
38.2
-1.3
2.9
42.5
44.5
Minor BPS
35
-1
2.3
50.33
42.8

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025727
86530094 - 86602285
72192
ENSAPLT00000017672
86499468 - 86602285
102818
ENSAPLT00000015462
86525517 - 86602285
76769
ENSAPLT00000033897
86551229 - 86602285
51057