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Intron Name: Anas_platyrhynchos_platyrhynchos_3_86571934_86573733_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86571934 - 86573733

Intron Length:

1800

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

ATGTATTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

TTTTGTTGAAAT

Flanking Amino Acid:

TPNLQGFHNAIAAGATEVSV

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

68.4

36.6

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

79.8

0.67

0.9

73.7

40.9

Minor 5ss

35.9

-1.6

3.2

51.5

44.9

Minor BPS

57.7

0.32

82.05

39.3

Associated Gene:

Gene:

HMGCLL1

Ensembl Gene ID:

ENSAPLG00000014814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025727

86530094 - 86602285

72192

ENSAPLT00000017672

86499468 - 86602285

102818

ENSAPLT00000015462

86525517 - 86602285

76769

ENSAPLT00000033897

86551229 - 86602285

51057