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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86573830_86578251_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86573830 - 86578251
Intron Length:
4422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATATATATTT
Flanking Amino Acid:
SFVSSKWVPQMADHNEVMRG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.2
0.59
0.9
73.8
41.4
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
47.4
-0.1
2
70.68
40.4

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033897
86551229 - 86602285
51057
ENSAPLT00000025727
86530094 - 86602285
72192
ENSAPLT00000017672
86499468 - 86602285
102818
ENSAPLT00000015462
86525517 - 86602285
76769
ENSAPLT00000043692
86525517 - 86602285
76769