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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86578360_86579346_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86578360 - 86579346
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
AATACTTTACTA
Flanking Amino Acid:
GPRDGLQNEKVIVPTDIKIE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
73.6
0.53
0.9
67.2
37.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
55
0.15
1.6
63.44
37.1

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015462
86525517 - 86602285
76769
ENSAPLT00000043692
86525517 - 86602285
76769
ENSAPLT00000033897
86551229 - 86602285
51057
ENSAPLT00000025727
86530094 - 86602285
72192
ENSAPLT00000017672
86499468 - 86602285
102818