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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86579425_86602180_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86579425 - 86602180
Intron Length:
22756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
ATTTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTTCAGTATCG
Flanking Amino Acid:
EPVPPPQPGQESQTSGLPEY
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
45.7
-0.4
2.5
61.39
46

Associated Gene:

Gene:
HMGCLL1
Ensembl Gene ID:
ENSAPLG00000014814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025727
86530094 - 86602285
72192
ENSAPLT00000017672
86499468 - 86602285
102818
ENSAPLT00000015462
86525517 - 86602285
76769
ENSAPLT00000043692
86525517 - 86602285
76769
ENSAPLT00000033897
86551229 - 86602285
51057