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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86667966_86671703_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86667966 - 86671703
Intron Length:
3738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCCTC
5'SS Class:
major
3'SS Sequence:
ATCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATCT
Flanking Amino Acid:
ATNHAIVQTLVHLMFPDHVP
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.5
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.9
77.4
36.3
Minor 5ss
48.7
-0.1
2.8
64.9
40.9
Minor BPS
57.2
0.3
1.8
75.11
41.8

Associated Gene:

Gene:
BMP5
Ensembl Gene ID:
ENSAPLG00000014765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015395
86667816 - 86720863
53048