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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86671815_86673664_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86671815 - 86673664
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
GTGGGTTTATTT
Flanking Amino Acid:
YVSFRDLGWQDWIIAPEGYA
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
78.9
0.65
0.9
77.1
37.1
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
44.7
-0.3
2
59.49
44.9

Associated Gene:

Gene:
BMP5
Ensembl Gene ID:
ENSAPLG00000014765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015395
86667816 - 86720863
53048