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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86673742_86681484_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86673742 - 86681484
Intron Length:
7743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACGA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAGT
Flanking Amino Acid:
QDSSRMPSVGDYNTSEQKQA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
62.6
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.7
76.8
25.4
Minor 5ss
30.9
-2.2
3
31.2
42.3
Minor BPS
75.6
0.88
1.5
90.89
33.1

Associated Gene:

Gene:
BMP5
Ensembl Gene ID:
ENSAPLG00000014765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015395
86667816 - 86720863
53048