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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86681683_86692201_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86681683 - 86692201
Intron Length:
10519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATGTATATGACT
Flanking Amino Acid:
GLQLCAETGDGRSINVKSAG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.4
39.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.5
0.57
0.9
68.9
36.8
Minor 5ss
30.3
-2.3
3.3
39.1
46.1
Minor BPS
49.7
0.06
1.8
71.17
39.7

Associated Gene:

Gene:
BMP5
Ensembl Gene ID:
ENSAPLG00000014765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015395
86667816 - 86720863
53048