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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86692351_86697648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86692351 - 86697648
Intron Length:
5298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTGC
5'SS Class:
major
3'SS Sequence:
TTCTTTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
IYQIIKEYPNRDADLFLLDT
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
64.3
43.1
Major BPS
80
0.75
1
78.6
31
Major PPT
74.4
0.55
0.9
74.7
33.8
Minor 5ss
45
-0.5
2.9
62.1
42.5
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
BMP5
Ensembl Gene ID:
ENSAPLG00000014765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015395
86667816 - 86720863
53048