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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86853484_86856128_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86853484 - 86856128
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTCTAAAAA
Flanking Amino Acid:
KYSGKEETVQFDIQKLRIYC
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77
0.61
0.9
70.8
38.9
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
66.9
0.53
1.7
80.08
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003544
86850473 - 86865977
15505