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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86858360_86858492_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86858360 - 86858492
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
CCCCCTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TCCCCCTTATTT
Flanking Amino Acid:
TSRVDLSELTRNVFPEGLPP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
70.3
0.46
0.8
68.8
30.5
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
60.8
0.42
1.6
72.9
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003544
86850473 - 86865977
15505