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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_86858662_86863367_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86858662 - 86863367
Intron Length:
4706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTCATTTATT
Flanking Amino Acid:
KEVIKQKLCEESVCPTRIPV
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
77.6
36
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
61.7
0.45
1.9
82.28
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003442
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003544
86850473 - 86865977
15505