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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8701072_8702252_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8701072 - 8702252
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCATTCTGATGT
Flanking Amino Acid:
IVFIYDEKVSWWESLVLVLM
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
46.9
-0.1
2
64.91
45.5

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279