Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87018785_87019129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87018785 - 87019129

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTAGAC

5'SS Class:

major

3'SS Sequence:

CTTTGTTGTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

AGTAATTTAGTT

Flanking Amino Acid:

EGADKDISAKAVQDKLDQMV

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

62.3

36.7

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

77.6

0.62

0.9

76.9

37.3

Minor 5ss

29.4

-2.4

3.5

40.9

45.7

Minor BPS

48.2

-0

1.7

65.04

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045495

87016830 - 87022134

5305