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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87019362_87021975_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87019362 - 87021975
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGTT
5'SS Class:
major
3'SS Sequence:
ACCACCCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTCTTCACCA
Flanking Amino Acid:
LDEAISQCTQFHDKIDPTLE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
71.6
38.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
66.5
0.37
0.9
61.7
34
Minor 5ss
48
-0.2
3.3
73.4
43.4
Minor BPS
58
0.25
1.8
72.25
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045495
87016830 - 87022134
5305