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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8702307_8703886_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8702307 - 8703886
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTGTTTCATT
Flanking Amino Acid:
LMYAIYIVIMKYNSTIHHCF
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.3
0.68
0.9
76.3
37.6
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
51.6
0.13
2.2
75.88
41.7

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279