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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8707598_8708511_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8707598 - 8708511
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GGTTCTTTCACG
Flanking Amino Acid:
EGPYTPFDLPTGKTEVLKWL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
64
40.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
36
-1.6
3
49.7
40.4
Minor BPS
59.8
0.16
1.8
64.71
43.1

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000025864
8694950 - 8840228
145279