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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8708679_8709901_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8708679 - 8709901
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TAATTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
GACAGTTTAATT
Flanking Amino Acid:
AAFSYMMVWMVTIIGYTLGI
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
72.4
0.5
0.8
70.8
35.5
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
49.3
0.02
1.8
62.14
42.3

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279