Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87097795_87098376_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

87097795 - 87098376

Intron Length:

582

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTCATCTGC

5'SS Class:

major

3'SS Sequence:

CCAAATAACCGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TTCCAAATAACC

Flanking Amino Acid:

SLKRLEEEEVEIKSEFSLSS

Intron Amino Acid Position:

1108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.1

0.31

1.4

56.9

43.4

Major BPS

61.3

0.28

30.6

Major PPT

42.9

-0.4

1.6

35.9

38.8

Minor 5ss

39.7

-1.2

2.9

51.7

44.9

Minor BPS

46.9

-0.2

63.55

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038765

87097706 - 87113950

16245