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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87098480_87098717_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87098480 - 87098717
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CGCCCTTCCATT
Flanking Amino Acid:
QSSSDFIIQEFMDLRTRYTA
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
86.6
0.82
0.7
81.5
30.6
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
42.9
-0.4
1.9
53.63
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245