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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87098826_87098915_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87098826 - 87098915
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GAATGCTGAACA
Flanking Amino Acid:
YAEQYSAAVKDYELQTMTYR
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.6
0.71
0.8
77
36.7
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
53
0.09
1.9
63.72
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245