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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87099000_87099642_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87099000 - 87099642
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCATATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATTCATATTT
Flanking Amino Acid:
ALAKQLNQHKMLVSEIEMKQ
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82
0.72
0.9
76
37.5
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
50.7
0.1
1.8
71.84
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245