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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87099806_87102015_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
87099806 - 87102015
Intron Length:
2210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
AACATAAAATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTTTCTAACA
Flanking Amino Acid:
WQNIHSQIENRLRDLESINK
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
50.4
0.01
1.1
46.6
43.2
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
65.6
0.49
1.6
76.8
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245